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Table 1 Fusion genes and breakpoint paths predicted by BreakTrans-0.0.6

From: BreakTrans: uncovering the genomic architecture of gene fusions

Number Fusion genes Breakpoint paths
1 ANKHD1-EIF4EBP3>PCDH1 5:139807117+65|5:141217466-
2 CCDC85C>SETD3 14:99059254-7|14:98966917-
3 RARA>PKIA 17:35727917+45|8:79637984+
4 SUMF1>LRRFIP2 3:4338455-34|3:37158400-
5 TATDN1>GSDMB 8:125618280-93|17:35321200-
6 WDR67>ZNF704 8:81882283-4|8:81882470+0|8:81916434+18|8:124171162-0|8:124158930-36|8:124161970+
   8:124171162+18|8:81916434-
7 MTBP>SAMD12 8:121547851+33|8:119503797+0|8:119661057+2|8:119666167-0|8:119662603-33|8:118985543+0|8:118990300+28|8:118992237-0|8:118985543-33|8:119662603+0|8:119666167+2|8:119661057-
8 PREX1>CPNE1 20:46795673-17|20:33925625-0|20:33923847-18|20:33679982-
9 DHX35-ITCH  
10 NFS1-PREX1  
11 CYTH1-EIF3H  
12 CSE1L-ENSG00000236127  
  1. Eight gene fusions were predicted by BreakTrans-0.0.6, including 6 previously known fusions (1 to 6) and 2 novel ones (7 and 8). Four previously known fusions (9 to 12) were not predicted due primarily to lack of coverage. For each fusion, at least one underlying genomic allele is found, represented as a breakpoint path that consists of a serial of breakpoint strings (Materials and methods). '>' represents the predicted (5' to 3') order of a gene fusion.