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Table 2 Structural variants (SVs) between C57BL/6N and C57BL/6J

From: A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains

Chr SV starta SV stopa Ancestral event Strain Gene Overlap
1 149518394 149524878 LINE Ins B6J - -
2 7325700 7330977 IAP Ins B6J - -
2 70619835 70620080 SINE Ins B6J Tlk1 Intron
3 77975065 77977953 Del B6N - -
3 5049018 5055845 LINE Ins B6J - -
3 60336036 60336037 Del (large) B6J Mbnl1 Intron
3 41885819 41887255 LINE Ins B6J - -
3 18484710 18484889 Del B6N - -
4 101954274 101954395 Del B6N Pde4b Intron
4 116051393 116051799 MaLR Ins B6J Mast2 Intron
5 46376307 46377852 LINE Ins B6J - -
5 90356490 90356491 Del (~300 bp) B6J - -
5 146248861 146261885 Ins B6J+others - -
6 18112291 18119019 LINE Ins B6J - -
6 62964974 62972907 LINE Ins B6J - -
6 86478779 86479400 Ins B6J - -
6 103669536 103676487 LINE Ins B6J Chl1 Intron
6 104207081 104214434 LINE Ins B6J - -
7 92095990 92096149 Del B6N Vmn2r65 Exon
7 27636128 27748456 Ins B6J Cyp2a22 Entire
7 100892501 100899058 LINE Ins B6J - -
7 139306094 139307981 MaLR Ins B6J Cpxm2 Intron
8 16716381 16716382 Del (large) B6J Csmd1 Intron
9 25674550 25674770 SINE Ins B6J - -
9 58544415 58546304 MaLR Ins B6J 2410076I21Rik Intron
10 3039196 3039197 Del (large) B6J - -
10 29339441 29345955 LINE Ins B6J - -
10 32536420 32543464 LINE Ins B6J Nkain2 Intron
10 49543303 49550645 LINE Ins B6J - -
11 104906390 104906621 Del B6N - -
11 119560391 119566827 MTA Ins B6J Rptor Intron
12 42023964 42032747 Del B6N Immp2l Intron
13 71224557 71231011 MTA Ins B6J - -
13 120164268 120164269 Del (large) B6J Nnt Exon
14 112825585 112832341 LINE Ins B6J - -
15 49554596 49554597 Ins (large) B6N - -
15 31106173 31106382 VNTR - - -
16 6115804 6138105 Del B6N - -
17 60286367 60286368 Ins (~2000 bp) B6N - -
18 4809271 4809272 Del (~1200 bp) B6J - -
19 12863187 12863188 Del (~1800 bp) B6J Zfp91 Intron
X 15697909 15697910 Del (~400 bp) B6J - -
X 95155499 95163160 LINE Ins B6J - -
  1. Abbreviations: Del, deletion; IAP, intracisternal A particle; Ins, insertion; LINE, long interspersed nuclear element; MaLR, mammalian apparent long terminal repeat retrotransposon; MTA, member of transcript retrotransposon; SINE, short interspersed nuclear element; VNTR, variable number tandem repeat.
  2. aStart and stop coordinates are given for MGSCv37 of the mouse reference genome.