Table 2 Structural variants (SVs) between C57BL/6N and C57BL/6J
From: A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains
Chr | SV starta | SV stopa | Ancestral event | Strain | Gene | Overlap |
|---|---|---|---|---|---|---|
1 | 149518394 | 149524878 | LINE Ins | B6J | - | - |
2 | 7325700 | 7330977 | IAP Ins | B6J | - | - |
2 | 70619835 | 70620080 | SINE Ins | B6J | Tlk1 | Intron |
3 | 77975065 | 77977953 | Del | B6N | - | - |
3 | 5049018 | 5055845 | LINE Ins | B6J | - | - |
3 | 60336036 | 60336037 | Del (large) | B6J | Mbnl1 | Intron |
3 | 41885819 | 41887255 | LINE Ins | B6J | - | - |
3 | 18484710 | 18484889 | Del | B6N | - | - |
4 | 101954274 | 101954395 | Del | B6N | Pde4b | Intron |
4 | 116051393 | 116051799 | MaLR Ins | B6J | Mast2 | Intron |
5 | 46376307 | 46377852 | LINE Ins | B6J | - | - |
5 | 90356490 | 90356491 | Del (~300 bp) | B6J | - | - |
5 | 146248861 | 146261885 | Ins | B6J+others | - | - |
6 | 18112291 | 18119019 | LINE Ins | B6J | - | - |
6 | 62964974 | 62972907 | LINE Ins | B6J | - | - |
6 | 86478779 | 86479400 | Ins | B6J | - | - |
6 | 103669536 | 103676487 | LINE Ins | B6J | Chl1 | Intron |
6 | 104207081 | 104214434 | LINE Ins | B6J | - | - |
7 | 92095990 | 92096149 | Del | B6N | Vmn2r65 | Exon |
7 | 27636128 | 27748456 | Ins | B6J | Cyp2a22 | Entire |
7 | 100892501 | 100899058 | LINE Ins | B6J | - | - |
7 | 139306094 | 139307981 | MaLR Ins | B6J | Cpxm2 | Intron |
8 | 16716381 | 16716382 | Del (large) | B6J | Csmd1 | Intron |
9 | 25674550 | 25674770 | SINE Ins | B6J | - | - |
9 | 58544415 | 58546304 | MaLR Ins | B6J | 2410076I21Rik | Intron |
10 | 3039196 | 3039197 | Del (large) | B6J | - | - |
10 | 29339441 | 29345955 | LINE Ins | B6J | - | - |
10 | 32536420 | 32543464 | LINE Ins | B6J | Nkain2 | Intron |
10 | 49543303 | 49550645 | LINE Ins | B6J | - | - |
11 | 104906390 | 104906621 | Del | B6N | - | - |
11 | 119560391 | 119566827 | MTA Ins | B6J | Rptor | Intron |
12 | 42023964 | 42032747 | Del | B6N | Immp2l | Intron |
13 | 71224557 | 71231011 | MTA Ins | B6J | - | - |
13 | 120164268 | 120164269 | Del (large) | B6J | Nnt | Exon |
14 | 112825585 | 112832341 | LINE Ins | B6J | - | - |
15 | 49554596 | 49554597 | Ins (large) | B6N | - | - |
15 | 31106173 | 31106382 | VNTR | - | - | - |
16 | 6115804 | 6138105 | Del | B6N | - | - |
17 | 60286367 | 60286368 | Ins (~2000 bp) | B6N | - | - |
18 | 4809271 | 4809272 | Del (~1200 bp) | B6J | - | - |
19 | 12863187 | 12863188 | Del (~1800 bp) | B6J | Zfp91 | Intron |
X | 15697909 | 15697910 | Del (~400 bp) | B6J | - | - |
X | 95155499 | 95163160 | LINE Ins | B6J | - | - |