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Table 1 Coding single-nucleotide polymorphisms and small indels identified in the comparison between C57BL/6N and C57BL/6J

From: A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains

Chr Position B6J
base
B6N
base
Strain Gene name B6J
amino acid
B6N
amino acid
Nonsense polymorphism
13 65023280 C T B6N Spata31 Arginine *(stop)
Missense polymorphisms
1 59904011 G A B6N Bmpr2 Arginine Glutamine
3 95538799 T C B6J Ecm1 Isoleucine Valine
3 96658480 A G B6J Pdzk1 Asparagine Aspartic acid
4 21800831 C G B6J Sfrs18 Arginine Glycine
4 137777588 C T B6N Hp1bp3 Leucine Phenylalanine
4 140354038 A G B6N Padi3 Leucine Proline
4 148318468 T C B6J Casz1 Leucine Proline
5 90204376 C T B6N Adamts3 Valine Isoleucine
5 97187161 T C B6J Fras1 Leucine Proline
5 113191741 C T B6N Myo18b Arginine Histidine
6 39350455 T A B6J Mkrn1 Asparagine Tyrosine
7 3222538 T C B6J Nlrp12 Lysine Arginine
7 63386662 G A B6J Herc2 Glycine Aspartic acid
7 86256240 A C B6J Acan Histidine Proline
7 110121823 C T B6N Olfr577 Valine Isoleucine
7 127278693 G A B6N+Spretus Zp2 Alanine Valine
7 129311164 C T B6N Plk1 Arginine Tryptophan
9 24935069 C G B6N Herpud2 Valine Leucine
10 66700922 T C B6J Jmjd1c Leucine Proline
10 78632222 A G B6N Vmn2r80 Asparagine Serine
10 87554578 T C B6N Pmch Isoleucine Threonine
11 46036117 G A B6N Cyfip2 Serine Phenylalanine
11 90341985 C T B6N Stxb4 Stxb4 Threonine
13 21560172 A G B6J Nkapl Glycine Arginine
13 73465884 A G B6J Ndufs6 Valine Alanine
13 93833534 C G B6J Cmya5 Alanine Proline
14 70986011 G T B6N Fam160b2 Serine Arginine
15 11266138 G T B6N Adamts12 Cysteine Phenylalanine
15 77468437 A C B6J Apol11b Isoleucine Arginine
16 35291630 G A B6N Adcy5 Valine Methionine
17 47537359 T C B6J Guca1a Isoleucine Valine
X 131227581 C A B6N Armcx4 Alanine Aspartic acid
Splice site polymorphism
5 54280548 A G B6J Tbc1d19 - -
Frameshift 1 bp deletions
1 141133664 G - B6N Crb1 - -
9 65127938 G - B6J Cilp - -
  1. Abbreviations: Chr, chromosome.