From: THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data
Sample PD4120a | |||
---|---|---|---|
Algorithm | % normal admixture | Clonal (% tumor purity)a | Subclonal (%)a |
THetA, n = 2 | 34.3% | Del: 1p, 4q, 13, 16q, 22q | - |
(segmentation) | Â | +1: 1q | Â |
 |  | (65.7%) |  |
THetA, n = 2 (chromosome arms) | 38.3% | Del: 1p, 4q, 13, 16q, 22q | - |
 |  | +1: 1q |  |
 |  | (61.7%) |  |
CNAnormb (chromosome arms) | 32.8% | Del: 1p, 4q, 13, 16q, 22q | - |
 |  | +1: 1q |  |
 |  | (67.2%) |  |
ASCATc | 34% | Del: 1p, 4q, 13, 16q, 22q | - |
(virtual SNP array) | Â | +1: 1q, 17q, 18, 19, 20 | Â |
 |  | (66.0%) |  |
ABSOLUTEd (segmentation) | 35% | (65.0%) | - |
THetA | 28.0% | Del: 1p, 4q, 16q, 22q12.2- | Del: 13, 22q11.2-12.1 |
n = 3 | Â | 13.3 | +1: 1q |
 |  | (72.0%) | (61.9%) |
 |  |  | Del: 8, 11, 12, 14, 15 |
 |  |  | (10.1%) |
 |  |  | Del: 2, 7, 4p , 6, 9, 18, 21 |
Nik-Zainal et al. (2012) | 30% | Del: 4q | Del: 13, t(1;22) |
[25] | Â | +1: 1q | (47.6%) |
 |  | (70.0%) | Tetraploid with: |
 |  |  | Del(-2): 2, 7 |
 |  |  | Del(-1): 6, 8, 9, 11, 12, |
 |  |  | 14, 15, 18, 21 |
 |  |  | (9.8%) |