Table 3 Gene Ontology terms associated with temporal gene expression profiles during excystation
From: The genome and transcriptome of the enteric parasite Entamoeba invadens, a model for encystation
Profile/clustera | GO category name | Fold enrichmentb | Corrected P-valuec |
|---|---|---|---|
Profile 45 | Protein binding | 3.1 | 0.002 |
| Â | Catalytic activity | 3.4 | 0.002 |
| Â | Metabolic process | 3.4 | 0.05 |
Cluster (profiles 49, 40, 41, 37, 48, 44) | Zinc ion binding | 1.7 | <0.001 |
| Â | Catalytic activity | 1.7 | <0.001 |
| Â | Pyridoxal phosphate binding | 3.7 | 0.024 |
| Â | Nucleic acid binding | 1.6 | 0.028 |
| Â | Heat shock protein binding | 3 | 0.032 |
Profile 49 | Helicase activity | 4.3 | 0.042 |
| Â | Ubiquitin-dependent protein catabolic process | 4.1 | 0.05 |
Profile 40 | Binding | 2.1 | 0.01 |
| Â | Zinc ion binding | 2 | 0.038 |
Profile 41 | Membrane | 3.7 | 0.006 |
Profile 37 | Protein binding | 2.4 | 0.022 |
| Â | Catalytic activity | 2.5 | 0.048 |
Profile 47 | Oxidoreductase activity | 6.3 | 0.018 |
Cluster (profiles 0, 4, 7, 8, 11, 15, 16, 17, 18) | Ribosome | 3.7 | <0.001 |
| Â | Structural constituent of ribosome | 3.6 | <0.001 |
| Â | Translation | 3.1 | <0.001 |
| Â | Intracellular | 1.5 | <0.001 |
| Â | DNA binding | 2.1 | <0.001 |
| Â | Nucleosome | 5.6 | <0.001 |
| Â | Nucleus | 2.1 | <0.001 |
| Â | Nucleosome assembly | 4 | 0.002 |
| Â | Signal transduction | 1.6 | 0.024 |
| Â | Threonine-type endopeptidase activity | 4.2 | 0.044 |
| Â | Proteasome core complex | 4.2 | 0.044 |
| Â | Proteolysis involved in cellular protein catabolic process | 4.2 | 0.044 |
Profile 17 | Ribosome | 7.1 | <0.001 |
| Â | Structural constituent of ribosome | 6.8 | <0.001 |
| Â | Translation | 6.3 | <0.001 |
| Â | Intracellular | 1.9 | 0.002 |
Profile 18 | Intracellular | 2.1 | 0.006 |
| Â | Ribosome | 5 | 0.006 |
| Â | Structural constituent of ribosome | 4.8 | 0.008 |
| Â | Translation | 4.2 | 0.02 |
| Â | Signal transduction | 3 | 0.024 |
Profile 7 | Ribosome | 5.3 | 0.002 |
| Â | Structural constituent of ribosome | 5.1 | 0.002 |
| Â | Translation | 4 | 0.012 |
| Â | DNA binding | 3.1 | 0.04 |
Profile 8 | Intracellular | 2.3 | 0.01 |
| Â | Protein transport | 3.6 | 0.012 |
| Â | GTP binding | 3 | 0.024 |
| Â | Catalytic activity | 3.2 | 0.024 |
| Â | Small GTPase mediated signal transduction | 2.9 | 0.032 |
Profile 16 | DNA binding | 4.4 | <0.001 |