Skip to main content

Table 1 Introns detected by whole transcriptome mapping

From: The genome and transcriptome of the enteric parasite Entamoeba invadens, a model for encystation

Sample Introns Confirm annotation (%)a Match 5' Match 3' Novel
Trophozoite 1,628 1,345 (23%) 19 11 253
Cyst_8h 2,163 1,771 (30%) 23 10 359
Cyst_24h 1,955 1,536 (26%) 21 12 386
Cyst_48h 1,047 811 (14%) 15 5 216
Cyst_72h 1,272 1,027 (17%) 9 6 230
Excyst_2h 1,438 1,229 (21%) 12 6 191
Excyst_8h 764 666 (11%) 5 2 91
All 3,239 2,470 (42%) 35 17 717
  1. aPercentage of 5,894 introns predicted from genome annotation.