Table 1 Introns detected by whole transcriptome mapping
From: The genome and transcriptome of the enteric parasite Entamoeba invadens, a model for encystation
Sample | Introns | Confirm annotation (%)a | Match 5' | Match 3' | Novel |
|---|---|---|---|---|---|
Trophozoite | 1,628 | 1,345 (23%) | 19 | 11 | 253 |
Cyst_8h | 2,163 | 1,771 (30%) | 23 | 10 | 359 |
Cyst_24h | 1,955 | 1,536 (26%) | 21 | 12 | 386 |
Cyst_48h | 1,047 | 811 (14%) | 15 | 5 | 216 |
Cyst_72h | 1,272 | 1,027 (17%) | 9 | 6 | 230 |
Excyst_2h | 1,438 | 1,229 (21%) | 12 | 6 | 191 |
Excyst_8h | 764 | 666 (11%) | 5 | 2 | 91 |
All | 3,239 | 2,470 (42%) | 35 | 17 | 717 |