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Table 1 Total number of vlincRNAs and overlap with All promoters in different cell lines and tissues

From: VlincRNAs controlled by retroviral elements are a hallmark of pluripotency and cancer

Source Cell line/Tissue Cell Type Number of vlincRNAs VlincRNAs Overlapping with All Promoters Overlap Expected by Chance Fold over chance p-value
Kapranov et al[12] K562 + Ewing Sarcomas Malignant 580 336* 131.7 2.5 2.4E-74
This work Blood Normal Tissue 613 321* 142.5 2.2 7.7E-55
ENCODE K562 Malignant 407 216** 23.2 9.3 1.3E-153
ENCODE HepG2 Malignant 501 192** 34.1 5.6 7.5E-91
ENCODE HeLaS3 Malignant 206 N/D N/D N/D N/D
ENCODE GM12878 Immortalized 591 128** 27.5 4.6 3.6E-48
ENCODE NHEK Primary 248 51** 12.1 4.2 2.28 E-18
ENCODE HUVEC Primary 340 86** 13.1 6.5 1.9E-44
ENCODE H1-hEsc Embryonic Stem 469 205** 24.9 8.2 1.9E-130
This work Mouse Lung Normal Tissue 225 115* 49.3 2.3 7.6E-22
  1. * Overlap was done on combined ENCODE All promoter dataset from all 9 cell lines
  2. ** Overlap was done on the All ENCODE promoter dataset from the same cell line