From: Separating homeologs by phasing in the tetraploid wheat transcriptome
 | T.urartu | T.turgidum |
---|---|---|
100-bp paired-end reads (n) | 248.5 million | 488.9 million |
Reads after digital normalizationa (n) | 47.3 million | 110.7 million |
Contigs (n) | 86,247 | 140,118 |
Mean contig size (bp) | 1,417 bp | 1,299 bp |
Min contig size (bp) | 212 bp | 298 bp |
Max contig size (bp) | 17,959 bp | 26,226 bp |
GC content (%) | 49% | 49% |
Total transcriptome size (Mb) | 122 Mb | 181 Mb |
Reads mapping to the assembly (% of total reads) | 82.2% | 81.5% |
Reads mapped in proper pairs (% of total reads) | 73.0% | 71.5% |
Unique alignments (% of total mapped) | 52.8% | 76.7% |
Benchmark genesb assembled > 50% length in a single contig | 12,693 (94%) | 12,961 (96%) |
Benchmark genesb assembled > 90% length in a single contig | 10,727 (80%) | 10,197 (76%) |