Table 2 Analysis of Morex and Barke sequence alignments in regions showing CNV
From: Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome
Sequence present in Barke (%) | Fragments with NoCNV (n, %) | DownCNV/PAVs (n, %) | UpCNVs (n, %) |
|---|---|---|---|
0 | 156 (6) | 114 (34) | 7 (11) |
0-24 | 31 (1) | 16 (5) | 0 (0) |
25-49 | 42 (2) | 18 (5) | 3 (5) |
50-74 | 59 (2) | 25 (7) | 2 (3) |
75-99 | 280 (10) | 84 (25) | 8 (13) |
100 | 2,130 (79) | 80 (24) | 49(79) |
Total number of contig fragments analyzed | 2,698 (100) | 337 (100) | 69 (100) |