|
Data set
|
Fractional error rate
|
|---|
|
Sample
|
#
|
Platform
|
Mismatches
|
Deletions
|
Insertions
|
Total
|
|---|
|
P. falciparum
|
1
|
Illumina MiSeq
|
0.0046
|
0.00021
|
0.00011
|
0.0049
|
| |
2
|
Ion Torrent PGM
|
0.0038
|
0.0090
|
0.0068
|
0.020
|
| |
3
|
Pacific Biosciences RS
|
0.0068
|
0.033
|
0.14
|
0.18
|
|
E. coli
|
4
|
Illumina MiSeq
|
0.0036
|
0.0000097
|
0.0000051
|
0.0037
|
| |
5
|
Ion Torrent PGM
|
0.0018
|
0.0053
|
0.0044
|
0.012
|
| |
6
|
Pacific Biosciences RS
|
0.0077
|
0.032
|
0.17
|
0.21
|
|
R. sphaeroides
|
7
|
Illumina MiSeq
|
0.0030
|
0.000018
|
0.0000089
|
0.0030
|
| |
8
|
Ion Torrent PGM
|
0.0014
|
0.0055
|
0.0037
|
0.011
|
| |
9
|
Pacific Biosciences RS
|
0.0076
|
0.029
|
0.16
|
0.20
|
|
Human
|
14
|
Illumina HiSeq
|
0.0030
|
0.00023
|
0.00017
|
0.0034
|
| |
15
|
Ion Torrent PGM
|
0.0060
|
0.0069
|
0.0057
|
0.019
|
| |
16
|
Complete Genomics
|
0.023
|
0.000099
|
0.000091
|
0.024
|
- For a subset of the data sets in Table 2, we show the fractional rates of mismatch, deletion, and insertion, computed relative to coverage, inferred by comparison to the reference sequences. For human we note that bona fide differences between the sample and reference sequence were recorded as errors.
