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Table 1 A summary of REAPR results on a range of genome sequences.

From: REAPR: a universal tool for genome assembly evaluation

       Scaffold errorsa  
Genome assembly Total length (Mb) Gaps
(n)
Total gap length
(bp)
Original N50 (Mb) Corrected N50b
(Mb)
Called by REAPR False +ve False
-ve
Error-free bases (%)
S. aureus TW20 k71 3.0 31 249 0.2 0.2 18 2 0 98.2
S. aureus, GAGE Velvet 2.9 128 17,688 0.8 0.2 24 0 1 89.5
P. falciparum de novo k55 23.8 11,636 2,638,349 0.4 0.3 56 1 8 81.2
P. falciparum v2.1.4 23.3 160 947 1.7 1.7 4 1 0 94.5
P. falciparum v3 23.3 0 0 1.7 1.7 NA NA NA 94.9
C. elegans WS228 100.3 0 0 17.5 17.5 NA NA NA 90.3
M. musculus GRCm38 2725.5 522 77,999,939 130.7 100.2 41 ND ND 80.1
H. sapiens GRCh37 3095.7 360 234,350,278 155.3 146.4 6 ND ND 79.1
  1. aScaffold errors are not applicable (NA) when the assembly contains no gaps. Where a second genome sequence was unavailable for comparison, false-positives and false-negatives were not determined (ND).
  2. bCorrected N50 refers to the N50 of the assembly after breaking the original assembly at breakpoints called by REAPR.