Table 1 Summary of CLIPZ mapping statistics and annotation categories for PAR-CLIP samples.
Feature | FBL | FBL (MNase) | NOP56 | NOP58 rep A | NOP58 rep B | DKC1 | Ago2 rep A | HuR rep A |
|---|---|---|---|---|---|---|---|---|
Mapping rate | 60.47% | 73.3% | 26.6% | 41.4% | 46.6% | 47.5% | 67.9% | 72.4% |
Library size | 3,755,090 | 7,396,138 | 2,789,209 | 3,678,032 | 3,798,895 | 7,727,966 | 5,899,130 | 5,491,479 |
T→C mutations among all observed mutations | 64.8% | 57.7% | 48.6% | 67.9% | 73.0% | 19.7% | 55.8% | 58.8% |
snoRNAs | 33.79% | 31.55% | 29.95% | 39.05% | 44.10% | 13.13% | 0.18% | 0.01% |
snRNAs | 20.87% | 33.17% | 15.45% | 22.36% | 25.60% | 10.18% | 0.28% | 0.02% |
rRNAs | 18.64% | 13.83% | 8.12% | 7.42% | 7.16% | 15.53% | 1.07% | 0.17% |
mRNAs | 14.47% | 11.61% | 22.27% | 19.42% | 15.14% | 17.40% | 50.07% | 47.87% |
Repeats | 6.42% | 1.60% | 15.51% | 6.08% | 3.36% | 18.39% | 11.29% | 42.08% |
tRNAs | 1.57% | 2.67% | 2.44% | 0.99% | 0.57% | 5.10% | 0.75% | 0.14% |
miRNAs | 0.07% | 0.18% | 0.02% | 0.01% | 0.01% | 0.05% | 20.41% | 00.00% |
Other Categories | 2.74% | 3.66% | 3.01% | 2.98% | 2.78% | 2.80% | 3.86% | 1.99% |
No annotation | 1.43% | 1.74% | 3.21% | 1.69% | 1.27% | 17.43% | 12.10% | 7.71% |