| Reads with true indels (1,428,499)a | Reads with sequencing-error indels (1,525,657)a | ||
---|---|---|---|---|
Program | Accuracy, % | Accuracy on 351,465 reads with boundary indels, %b | Accuracy, % | Accuracy on 357,334 reads with boundary indels, %b |
TopHat2 + Bowtie1 | 70.9 | 16.8 | 12.1 | 2.8 |
TopHat2 + Bowtie2 | 63.7 | 25.2 | 62.6 | 21.2 |
GSNAP | 82.7 | 71.9 | 83.1 | 71.8 |
RUM | 69.4 | 43.0 | 70.3 | 45.4 |
MapSplice | 27.3 | 3.7 | 27.5 | 3.8 |
STAR | 46.6 | 16.9 | 47.7 | 17.1 |