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Table 3 List of positively selected genes identified in the ground tit genome

From: Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude

Gene symbol Gene description P value
UAP1 UDP-N-acteylglucosamine pyrophosphorylase 1 1.30E-03
ST6GALNAC1 Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1.20E-03
PIGW GPI anchor biosynthetic process 1.00E-03
SNAP29 SNA transporter activity 9.00E-04
HSD17B12 Hydroxysteroid (17-beta) dehydrogenase 12 8.00E-04
SLC26A5 Sensory perception of sound 8.00E-04
MRPL27 Mitochondrial ribosomal protein L27 8.00E-04
ZFP64 Regulation of transcription 7.00E-04
TYMS Thymidylate synthase 7.00E-04
ATL2 Atlastin GTPase 2 6.00E-04
VRK1 Protoprotein amino acid phosphorylation 6.00E-04
TACR1 Tachykinin receptor 1 3.00E-04
CLDN1 Claudin 1 3.00E-04
C13orf27 Hydrolase activity 3.00E-04
GDF7 Growth factor activity 2.00E-04
INPP5F Inositolpolyphosphate-5-phosphatase F 2.00E-04
CPM Carboxypeptidase M 9.25E-05
AQP9 Response to osmotic stress 8.11E-05
CSRP3 Cardiac muscle tissue development 5.95E-05
CHD2 Chromodomain helicase DNA binding protein 2 5.62E-05
TTC7B Binding 4.93E-05
TADA2B Regulation of transcription 3.82E-05
Gga.52217 Homophilic cell adhesion 1.55E-05
RSAD2 Radical S-adenosyl methionine domain containing 2 1.17E-05
FAM5B Nervous system development 7.98E-06
ZNF639 Transcription factor activity 3.82E-06
SYN1 Synapsin I 3.63E-06
OCIAD1 Endosome 3.12E-06
TMC5 Integral to membrane 1.80E-06
GFPT2 Glutamine-fructose-6-phosphate transaminase 2 2.22E-07
ADRBK1 Beta-adrenergic receptor kinase 1 1.68E-07
ZNFX1 Metal ion binding 1.67E-07
DTX3L Deltex 3-like 1.88E-08
EZH2 Chromatin modification 1.57E-08
  1. Likelihood ratio tests based on a branch site model were performed on the CDS alignments of orthologs among chickens, zebra finches, turkeys, and ground tits. The P value was calculated and then adjusted with a conservative correction for multiple testing (false discovery rate <0.05, Holm's correction).