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Table 3 List of positively selected genes identified in the ground tit genome

From: Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude

Gene symbol

Gene description

P value

UAP1

UDP-N-acteylglucosamine pyrophosphorylase 1

1.30E-03

ST6GALNAC1

Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase

1.20E-03

PIGW

GPI anchor biosynthetic process

1.00E-03

SNAP29

SNA transporter activity

9.00E-04

HSD17B12

Hydroxysteroid (17-beta) dehydrogenase 12

8.00E-04

SLC26A5

Sensory perception of sound

8.00E-04

MRPL27

Mitochondrial ribosomal protein L27

8.00E-04

ZFP64

Regulation of transcription

7.00E-04

TYMS

Thymidylate synthase

7.00E-04

ATL2

Atlastin GTPase 2

6.00E-04

VRK1

Protoprotein amino acid phosphorylation

6.00E-04

TACR1

Tachykinin receptor 1

3.00E-04

CLDN1

Claudin 1

3.00E-04

C13orf27

Hydrolase activity

3.00E-04

GDF7

Growth factor activity

2.00E-04

INPP5F

Inositolpolyphosphate-5-phosphatase F

2.00E-04

CPM

Carboxypeptidase M

9.25E-05

AQP9

Response to osmotic stress

8.11E-05

CSRP3

Cardiac muscle tissue development

5.95E-05

CHD2

Chromodomain helicase DNA binding protein 2

5.62E-05

TTC7B

Binding

4.93E-05

TADA2B

Regulation of transcription

3.82E-05

Gga.52217

Homophilic cell adhesion

1.55E-05

RSAD2

Radical S-adenosyl methionine domain containing 2

1.17E-05

FAM5B

Nervous system development

7.98E-06

ZNF639

Transcription factor activity

3.82E-06

SYN1

Synapsin I

3.63E-06

OCIAD1

Endosome

3.12E-06

TMC5

Integral to membrane

1.80E-06

GFPT2

Glutamine-fructose-6-phosphate transaminase 2

2.22E-07

ADRBK1

Beta-adrenergic receptor kinase 1

1.68E-07

ZNFX1

Metal ion binding

1.67E-07

DTX3L

Deltex 3-like

1.88E-08

EZH2

Chromatin modification

1.57E-08

  1. Likelihood ratio tests based on a branch site model were performed on the CDS alignments of orthologs among chickens, zebra finches, turkeys, and ground tits. The P value was calculated and then adjusted with a conservative correction for multiple testing (false discovery rate <0.05, Holm's correction).