Table 1 Detection of allele-specific copy numbers in cell line HCC1187 using Patchwork, with (Affymetrix SNP 6
From: Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue
Total copies, n | Minor alleles, n | True positives, n | True negatives, n | False positives, n | False negatives, n | Sensitivity, % | Specificity, % |
|---|---|---|---|---|---|---|---|
1 | 0 | 16 | 679 | 0 | 0 | 100.0 | 100.0 |
2 | 0 | 480 | 208 | 0 | 7 | 98.6 | 100.0 |
| Â | 1 | 7 | 688 | 0 | 0 | 100.0 | 100.0 |
3 | 0 | 39 | 649 | 6 | 1 | 97.5 | 99.1 |
| Â | 1 | 46 | 646 | 2 | 1 | 97.9 | 99.7 |
4 | 1 | 10 | 684 | 1 | 0 | 100.0 | 99.9 |
| Â | 2 | 69 | 618 | 3 | 5 | 93.2 | 99.5 |