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Table 2 Confirmed fusion events from two bladder cancer cell lines

From: SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data

Sample ID Fusion genes (5'-3') Chromosome (5'-3') 5' position 3' position Fusion reads (span/junc) Detected in both cell lines Potential chromosomal rearrangement
5637 BDKRB2-BDKRB1 14-14 96703518 96728989 2/3 Yes No
5637 CIRH1A-TMCO7 16-16 69184807 69117388 20/20 Yes Yes
5637 CLN6-CALML4 15-15 68521840 68489966 4/4 Yes No
5637 GATSL1-GTF2I 7-7 74867229 74143124 3/15 No Yes
5637 HADHB-RBKS 2-2 26502983 28070964 12/10 Yes Yes
5637 POLA2-CDC42EP2 11-11 65063461 65088015 3/5 No No
5637 PSMD8-SIPA1L3 19-19 38871639 38673159 5/5 Yes Yes
5637 TIAM1-ATP5O 21-21 32537279 35276325 9/21 Yes Yes
T24 BDKRB2-BDKRB1 14-14 96703518 96728989 3/3 Yes No
T24 CIRH1A-TMCO7 16-16 69184807 69117388 19/24 Yes Yes
T24 CLN6-CALML4 15-15 68521840 68489966 6/5 Yes No
T24 CTBS-GNG5 1-1 85028940 84967653 3/6 No No
T24 HADHB-RBKS 2-2 26502983 28070964 6/7 Yes Yes
T24 PSMD8-SIPA1L3 19-19 38871639 38673159 6/5 Yes Yes
T24 TIAM1-ATP5O 21-21 32537279 35276325 8/28 Yes Yes
  1. All information is based on release 59 of the Ensembl hg19 annotation database. Six fusions were detected in both bladder cell lines, and five events may be derived from potential chromosomal rearrangements on the genome. For Fusion reads (span/junc), numbers of span-reads and junc-reads are separated by a slash.