From: SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data
Sample ID | Fusion genes (5'-3') | Chromosome (5'-3') | 5' position | 3' position | Fusion reads (span/junc) | Detected in both cell lines | Potential chromosomal rearrangement |
---|---|---|---|---|---|---|---|
5637 | BDKRB2-BDKRB1 | 14-14 | 96703518 | 96728989 | 2/3 | Yes | No |
5637 | CIRH1A-TMCO7 | 16-16 | 69184807 | 69117388 | 20/20 | Yes | Yes |
5637 | CLN6-CALML4 | 15-15 | 68521840 | 68489966 | 4/4 | Yes | No |
5637 | GATSL1-GTF2I | 7-7 | 74867229 | 74143124 | 3/15 | No | Yes |
5637 | HADHB-RBKS | 2-2 | 26502983 | 28070964 | 12/10 | Yes | Yes |
5637 | POLA2-CDC42EP2 | 11-11 | 65063461 | 65088015 | 3/5 | No | No |
5637 | PSMD8-SIPA1L3 | 19-19 | 38871639 | 38673159 | 5/5 | Yes | Yes |
5637 | TIAM1-ATP5O | 21-21 | 32537279 | 35276325 | 9/21 | Yes | Yes |
T24 | BDKRB2-BDKRB1 | 14-14 | 96703518 | 96728989 | 3/3 | Yes | No |
T24 | CIRH1A-TMCO7 | 16-16 | 69184807 | 69117388 | 19/24 | Yes | Yes |
T24 | CLN6-CALML4 | 15-15 | 68521840 | 68489966 | 6/5 | Yes | No |
T24 | CTBS-GNG5 | 1-1 | 85028940 | 84967653 | 3/6 | No | No |
T24 | HADHB-RBKS | 2-2 | 26502983 | 28070964 | 6/7 | Yes | Yes |
T24 | PSMD8-SIPA1L3 | 19-19 | 38871639 | 38673159 | 6/5 | Yes | Yes |
T24 | TIAM1-ATP5O | 21-21 | 32537279 | 35276325 | 8/28 | Yes | Yes |