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Table 3 Summary statistics of PARE libraries

From: Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

  

Trimmed

Genome matched

cDNA matched

cDNA locig

Tissue

Code

Totala

Distinctb

Totalc

Distinctd

Totale

Distinctf

 

Root

BDI20

10,748,481

2,342,429

9,279,374

1,605,048

4,298,418

1,021,275

22,762

Leaf

BDI21

13,772,836

1,238,807

12,266,285

684,817

4,930,319

391,613

20,333

Stem

BDI23

16,367,640

3,847,003

12,740,059

1,422,289

5,534,630

656,849

24,168

Panicle

BDI25

29,050,139

4,820,607

26,566,704

3,419,993

15,078,495

2,203,450

20,538

Total

 

69,939,096

 

60,852,422

5,202,600

29,841,862

3,165,429

25,129

  1. aThe total number of sequences obtained from a single run after trimming. bThe number of different sequences found in a set after trimming. cThe total number of sequences that match the genome at least once. dThe number of different sequences that match the genome at least once. eThe total number of sequences that match the sense strand of the coding sequence BdiCDSv1.2, the coding sequence minus UTR, at least once. fThe number of different sequences that match the sense strand of the coding sequence at least once. gThe total number of cDNA loci with at least one matching PARE sequence.
  2. PARE, parallel analysis of RNA ends; UTR, untranslated region.