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Table 6 CpG sites in liposarcoma subtypes

From: Integrative DNA methylation and gene expression analysis in high-grade soft tissue sarcomas

Short name CpG site Gene symbol FC methylation FC expression
Cluster 1 (DDLS) versus fat   
3–07 cg10895543 CDKN2A 13.1 9.2
Cluster 3 (PLS) versus fat   
3–07 cg10895543 CDKN2A 27.7 11.2
3–13 cg27652350 ALDH1A3 1/7.7 1/7.6
Cluster 5 (MLS) versus fat   
1–01 cg22298088 NNAT 1/9.8 6.0
1–13 cg12862537 NNAT 1/13.3 6.0
1–03 cg18508525 CD36 1/19.8 7.2
1–11 cg25181284 GPD1 1/9.1 1/2.4
1–14 cg04396791 SHANK2 19.9 3.3
1–18 cg10362475 SHANK2 8.1 3.3
1–20 cg01473816 ELF5 1/5.8 4.0
1–26 cg21359747 ALDH1A3 33.0 1/34.8
3–13 cg27652350 ALDH1A3 8.0 1/34.8
3–38 cg20786074 EFEMP1 9.4 1/22.5
  1. DDLS, dedifferentiated liposarcoma; MLS, myxoid liposarcoma; PLS, pleomorphic liposarcoma.
  2. FC is defined as “fold change”.