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Table 6 CpG sites in liposarcoma subtypes

From: Integrative DNA methylation and gene expression analysis in high-grade soft tissue sarcomas

Short name

CpG site

Gene symbol

FC methylation

FC expression

Cluster 1 (DDLS) versus fat

  

3–07

cg10895543

CDKN2A

13.1

9.2

Cluster 3 (PLS) versus fat

  

3–07

cg10895543

CDKN2A

27.7

11.2

3–13

cg27652350

ALDH1A3

1/7.7

1/7.6

Cluster 5 (MLS) versus fat

  

1–01

cg22298088

NNAT

1/9.8

6.0

1–13

cg12862537

NNAT

1/13.3

6.0

1–03

cg18508525

CD36

1/19.8

7.2

1–11

cg25181284

GPD1

1/9.1

1/2.4

1–14

cg04396791

SHANK2

19.9

3.3

1–18

cg10362475

SHANK2

8.1

3.3

1–20

cg01473816

ELF5

1/5.8

4.0

1–26

cg21359747

ALDH1A3

33.0

1/34.8

3–13

cg27652350

ALDH1A3

8.0

1/34.8

3–38

cg20786074

EFEMP1

9.4

1/22.5

  1. DDLS, dedifferentiated liposarcoma; MLS, myxoid liposarcoma; PLS, pleomorphic liposarcoma.
  2. FC is defined as “fold change”.