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Table 3 Robustness of non-synonymous and synonymous diversity estimates in the giant Galápagos tortoise

From: Population genomics of the endangered giant Galápagos tortoise

Condition Ind. (n) Paralogue filter Genes (n) SNPs (n) πS(%) πNS FIT α0.2
A1 ≥3 Stringent 1,053 1,933 0.18 ±0.03 0.35 ±0.06 -0.14 -0.30
A2 ≥4 Stringent 968 1,538 0.18 ±0.03 0.34 ±0.06 -0.12 -0.34
A3 5 Stringent 814 1,041 0.19 ±0.04 0.31 ±0.06 -0.10 -0.15
B1 ≥3 Very stringent 1,059 1,423 0.13 ±0.02 0.33 ±0.05 -0.11 -0.05
B2 ≥4 Very stringent 974 1,131 0.14 ±0.02 0.31 ±0.05 -0.10 -0.09
B3 5 Very stringent 820 769 0.14 ±0.02 0.28 ±0.05 -0.08 0.18
Emys ≥5 Stringent 953 1,845 0.42 ±0.04 0.09 ±0.02 0.21 0.57