Table 3 Robustness of non-synonymous and synonymous diversity estimates in the giant Galápagos tortoise
From: Population genomics of the endangered giant Galápagos tortoise
Condition | Ind. (n) | Paralogue filter | Genes (n) | SNPs (n) | πS(%) | πN/πS | FIT | α0.2 |
|---|---|---|---|---|---|---|---|---|
A1 | ≥3 | Stringent | 1,053 | 1,933 | 0.18 ±0.03 | 0.35 ±0.06 | -0.14 | -0.30 |
A2 | ≥4 | Stringent | 968 | 1,538 | 0.18 ±0.03 | 0.34 ±0.06 | -0.12 | -0.34 |
A3 | 5 | Stringent | 814 | 1,041 | 0.19 ±0.04 | 0.31 ±0.06 | -0.10 | -0.15 |
B1 | ≥3 | Very stringent | 1,059 | 1,423 | 0.13 ±0.02 | 0.33 ±0.05 | -0.11 | -0.05 |
B2 | ≥4 | Very stringent | 974 | 1,131 | 0.14 ±0.02 | 0.31 ±0.05 | -0.10 | -0.09 |
B3 | 5 | Very stringent | 820 | 769 | 0.14 ±0.02 | 0.28 ±0.05 | -0.08 | 0.18 |
Emys | ≥5 | Stringent | 953 | 1,845 | 0.42 ±0.04 | 0.09 ±0.02 | 0.21 | 0.57 |