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Table 3 Comparison of computation time and transcript coverage for different web-based transcript analysis platforms a

From: TRAPID: an efficient online tool for the functional and comparative analysis of de novoRNA-Seq transcriptomes

Size KAAS BLAST2GO TRAPID (GO) TRAPID (GF)b
50 2 (16%) 29 (44%) 5 (50%) 5 (70%)
500 4 (20%) 232 (77%) 3 (54%) 3 (65%)
5000 11 (23%) - 25 (54%) 25 (66%)
25392 32 (24%) - 95 (54%) 95 (66%)
  1. aTime is measured in minutes and numbers in parenthesis indicate the fraction of genes which received a GO functional annotation. The GO annotation for TRAPID was obtained through the protocol using the transfer from both the gene family and best-hit annotation. Missing values for BLAST2GO are due to runtimes larger than 24 h. The data is based on the 25,392 transcripts of Panicum hallii.
  2. bGF indicates the fraction of transcripts assigned to a gene family.