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Figure 2 | Genome Biology

Figure 2

From: Transcriptome and proteome quantification of a tumor model provides novel insights into post‐transcriptional gene regulation

Figure 2

Transcriptome analysis. (A) Distribution of the raw FPKM data (green). Transcripts with FPKM ≥ 1 (dashed gray line) are considered expressed and functional. The majority of transcripts have FPKM values of about 12. (B) Absolute transcript levels in brat and wild‐type samples correlate well. (C) About 82% of all KEGG‐annotated transcripts are expressed in fly heads. For each functional category the number of annotated (dark gray) and quantified transcripts (light gray) are shown together with the percentage of quantified transcripts (red). (D) Box‐and‐whisker plot of the average transcript abundance (FPKM) in different KEGG categories. FPKM, fragments per kilobase of transcript per million mapped fragments; KEGG, Kyoto Encyclopedia of Genes and Genomes.

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