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Table 3 List of metagenome data sets, sizes and fractions of LD12

From: Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade

 

Preprocessed

Nucmera

Lake

Reads

Mb

Number a

Percentage reads

Cov b

Damariscotta_spring

281,625

121

378

0.1%

0.2

Damariscotta_summer

323,939

140

5,268

1.6%

2.2

Ekoln

284,609

115

5,661

2.0%

2.2

Erken

554,862

233

29,262

5.3%

11.7

Mendota_spring

319,321

133

6,886

2.2%

2.7

Mendota_summer

447,054

192

2,063

0.5%

0.8

Vattern

285,637

117

3,031

1.1%

1.2

Sparkling_spring

66,160

26

43

0.1%

0.0

Sparkling_summer

38,977

15

815

2.1%

0.3

  1. aMetagenomic reads recruited with the program Nucmer and filtered for >75% identity and >100 bp alignment.
  2. bCov = coverage, calculated using 1.054 Mb patchwork genome size.
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Genome Biology

ISSN: 1474-760X

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