Skip to main content

Advertisement

Table 2 Summary of the CNV events detected by the four tools in the population data analysis a

From: EXCAVATOR: detecting copy number variants from whole-exome sequencing data

Sample EXCAVATOR XHMM CoNIFER ExomeCNV
NA10847 8 (6-2) 3 (3-0) 0 (0-0) 125 (122-3)
NA11840 3 (3-0) 2 (2-0) 0 (0-0) 124 (122-2)
NA12249 3 (3-0) 0 (0-0) 0 (0-0) 128 (128-0)
NA12717 6 (6-0) 4 (4-0) 0 (0-0) 113 (113-0)
NA12751 7 (5-2) 2 (2-0) 0 (0-0) 119 (118-1)
NA12760 2 (2-0) 2 (2-0) 0 (0-0) 126 (126-0)
NA12761 4 (2-2) 4 (3-1) 0 (0-0) 206 (173-33)
NA18959 6 (6-0) 2 (1-1) 0 (0-0) 149 (134-15)
NA18966 3 (3-0) 5 (4-1) 0 (0-0) 39 (35-4)
NA18967 5 (5-0) 2 (1-1) 0 (0-0) 21 (21-0)
NA18970 4 (4-0) 3 (3-0) 0 (0-0) 24 (24-0)
NA18973 7 (7-0) 0 (0-0) 0 (0-0) 91 (91-0)
NA18981 5 (4-1) 3 (3-0) 0 (0-0) 100 (99-1)
NA18999 3 (3-0) 2 (2-0) 0 (0-0) 229 (196-33)
NA19131 8 (6-2) 3 (3-0) 2 (1-1) 30 (30-0)
NA19138 5 (5-0) 3 (2-1) 1 (1-0) 48 (46-2)
NA19153 5 (5-0) 3 (1-2) 1 (0-1) 26 (25-1)
NA19159 4 (4-0) 5 (2-3) 2 (0-2) 28 (27-1)
NA19206 6 (5-1) 3 (2-1) 1 (0-1) 35 (33-2)
NA19223 7 (7-0) 4 (3-1) 2 (1-1) 30 (29-1)
Total 101 (91-10) 55 (43-12) 9 (6-3) 1,791 (1,692-99)
  1. aFor each sample, columns show the number of all CNV events (common-rare) identified by each tool.