Table 2 In vivo assay of 12 liver enhancer predictions in mouse
From: Sequence signatures extracted from proximal promoters can be used to predict distal enhancers
ID | Coordinates [hg18] | Score | Location | Activity | Chromatin statea |
|---|---|---|---|---|---|
E1 | Chr16:30009197-30009301 | 3.07 | Intronic ( TBX6 ) | Yes | No |
E7 | Chr10:82023332-82023434 | 2.60 | Intergenic (3' UTR of MAT1A) | No | Yes |
E2 | Chr17:69962796-69962894 | 2.21 | Intergenic (4.5Â kb downstream of GPRC5C) | No | No |
E8 | Chr1:31679030-31679149 | 1.94 | Intronic ( SERINC2 ) | Yes | Yes |
E12 | Chr3:134934911-134935091 | 1.81 | Intronic (TF) | Yes | Yes |
E4 | Chr11:72138832-72139119 | 1.83 | Intronic (ARAP1) | Yes | No |
E5 | Chr17:69957921-69958023 | 1.30 | Intergenic (3′ UTR of GPRC5C ) | Yes | No |
E10 | Chr17:69951076-69951329 | 1.57 | Intronic ( GPRC5C ) | Yes | Yes |
E3 | Chr11:72162942-72163179 | 1.47 | Intronic (STARD10) | No | No |
E9 | Chr11:72168912-72169046 | 1.33 | Intronic (STARD10) | No | Yes |
E11 | Chr11:72166225-72166509 | 1.36 | Intronic ( STARD10 ) | Yes | Yes |
E6 | Chr17:17439720-17439913 | 1.04 | Intergenic (4Â kb upstream of PEMT) | No | No |