Table 1 Tissues for which the promoter models produce the most robust sets of predictions for enhancers
From: Sequence signatures extracted from proximal promoters can be used to predict distal enhancers
Tissue | Number of enhancer predictions | Fraction of loci with enhancer predictions | Prediction scores | AUC | ||
|---|---|---|---|---|---|---|
| Â | Fold enrichment | P-value | Fold enrichment | P-value | P-value | Â |
Adrenal gland | 2.70 | 1.39 × 10-73 | 1.13 | 4.92 × 10-2 | 2.64 × 10-5 | 0.83 |
Colorectal adenocarcinoma | 4.63 | 1.79 × 10-155 | 1.25 | 2.12 × 10-3 | 4.11 × 10-8 | 0.85 |
Heart | 7.78 | 1.21 × 10-277 | 1.31 | 2.82 × 10-4 | 2.19 × 10-13 | 0.93 |
Kidney | 2.76 | 1.84 × 10-91 | 1.34 | 1.07 × 10-6 | 1.48 × 10-7 | 0.89 |
Liver | 4.69 | 4.99 × 10-93 | 1.40 | 4.75 × 10-4 | 9.08 × 10-5 | 0.92 |
Lung | 6.53 | 1.22 × 10-220 | 1.50 | 9.60 × 10-8 | 3.11 × 10-6 | 0.91 |
Placenta | 2.99 | 4.18 × 10-83 | 1.28 | 4.13 × 10-4 | 5.76 × 10-4 | 0.83 |
Prefrontal cortex | 1.23 | 2.27 × 10-10 | 1.21 | 3.47 × 10-6 | 2.71 × 10-2 | 0.66 |
Spinal cord | 1.50 | 8.27 × 10-38 | 1.15 | 2.39 × 10-4 | 1.38 × 10-2 | 0.72 |
Tongue | 1.92 | 3.17 × 10-62 | 1.10 | 3.85 × 10-2 | 4.82 × 10-5 | 0.78 |