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Table 4 Likelihoods of GAGE assemblies of human chromosome 14

From: CGAL: computing genome assembly likelihoods

Assembler Likelihood Number of reads mapped Coverage (%) Scaffold N50 (kb) Contig N50 (kb)
ABySS -23.44 × 108 22096466 82.22 2.1 2
ALLPATHS-LG -22.77 × 108 23122569 97.24 81647 36.5
CABOG -21.26 × 108 23433424 98.32 393 45.3
SOAPdenovo a a 98.17 455 14.7
Reference -19.04 × 108 23978017 - - -
  1. a Likelihood not computed as reads could not be mapped with Bowtie 2.