Skip to main content

Table 3 Likelihoods of GAGE assemblies of R. sphaeroides

From: CGAL: computing genome assembly likelihoods

Assembler Likelihood Number of reads mapped Coverage (%) Scaffold N50 (kb) Contig N50 (kb)
ABySS -27.55 × 107 1199197 99.11a 9 5.9
ALLPATHS-LG -26.61 × 107 1237938 99.53 3192 42.5
Bambus2 -32.56 × 107 1111596 95.07 2439 93.2
CABOG -39.23 × 107 1022732 92.49 66 20.2
MSR-CA -31.61 × 107 1155078 96.48 2976 22.1
SGA -31.58 × 107 1031547 97.69 51 4.5
SOAPdenovo -27.67 × 107 1212959 99.12 660 131.7
Velvet -28.77 × 107 1176125 98.40 353 15.7
Reference -25.99 × 107 1255750 - - -
  1. a Value reported in original paper is 96.99.