Skip to main content

Table 3 Repeats derived from de novo and homology-based predictions in S. indicum

From: Genome sequencing of the important oilseed crop Sesamum indicumL

Repeat type Repeat number Length occupied (bp) Percentage of sequences
Retroelements 18,322 5,811,328 1.98
SINEs 8 328 0.00
LINEs 2,266 374,709 0.13
LTR elements 16,048 5,436,291 1.85
DNA transposons 3,349 571,933 0.19
hobo-Activator 305 43,075 0.01
Tc1-IS630-Pogo 1,232 155,117 0.05
En-Spm 96 55,227 0.02
MuDR-IS905 2 347 0.00
Total bases masked   16,852,950 5.74
Unclassified repeatsa 835,752 92,380,494 31.65
Total interspersed repeats   92,380,494 31.65
  1. aUnclassified repeats refer to predicted repeats (sequences in the de novo repeats library) that cannot be classified by RepeatMasker.