From: Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
Experiments | Unique cDNAs | Unique cDNAs with deletions in sequence reads | Unique cDNAs with deletions (1 to 25 nucleotides) | Proportiona |
---|---|---|---|---|
Nova CLIP | 3,852,778 | 482,871 | 421,417 | 11% |
Ago mRNA CLIP | 1,105,217 | 79,126 | 61,211 | 5.5% |
mRNA-Seq | 4,857,809 | 60,110 | 18,936 | 0.4% |
Nova iCLIP | 166,330 | 6,174 | 3,749 | 2.3% |
hnRNP C iCLIP | 698,046 | 17,412 | 8,923 | 1.3% |
TIA1 iCLIP | 991,158 | 6,945 | 6,261 | 0.6% |
TIAL1 iCLIP | 2,786,090 | 12,011 | 10,963 | 0.4% |
TDP-43 iCLIP | 3,506,515 | 97,708 | 48,138 | 1.4% |