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Table 1 Summary of SOLiD libraries and sequence reads

From: Whole-genome sequencing and analysis of the Malaysian cynomolgus macaque (Macaca fascicularis) genome

Library Read length (bp) Insert size (bp) Runs Reads Mapped reads Analyzed readsa Coverage depth of analyzed reads
Fragment 50 - 8 2,648,128,521 1,976,720,560 (74.7%) 1,974,496,337 (74.6%) 33.4
Mate-pair A 25 (×2) 600-800 2 906,783,481 621,175,871 (68.5%) 355,589,008 (39.2%)b 3.4
Mate-pair B 25 (×2) 800-1,000 2 1,335,583,547 814,866,634 (61.0%) 508,168,736 (38.0%)b 4.8
Total - - 12 4,890,495,549 3,412,763,065 (69.8%) 2,838,254,081 (58.0%) 41.5
  1. aReads mapped on chrM and chrUr were removed. b'PCR or optical duplicates' (defined by Bioscope; mapped more than 100 loci) were removed, and properly paired reads were selected; each read of a pair was mapped on the same chromosome in a proper direction at a proper distance from each other.