Skip to main content

Table 3 Functional properties of gap closed regions

From: Toward almost closed genomes with GapFiller

Annotation type Total size in NC_000014 (bp) Nucleotides closed with GapFiller (bp) Portion of total nucleotides closed (%)
Gene 38,883,890 33,969 38.67%
mRNA 34,180,962 26,818 30.53%
CDS 29,380,348 23,617 26.89%
Other RNA 3,245,865 2,755 3.14%
V-segment 78,961 655 0.75%
C-region 36,984 23 0.03%
ncRNA 11,447 0 0%
Total 105,818,457 87,837 100.00%
  1. Functionalities associated with the nucleotides incorporated with GapFiller based on the annotation of human chromosome 14. Clearly the method can add valuable sequence information to a number of functionalities present in GenBank:NC_000014. Most nucleotides are incorporated in coding sequence (CDS) and mRNA regions. ncRNA, non-coding RNA.