GWAS genes in PPI | GWAS genes in SuM | GWAS genes in core SuM | |||||
---|---|---|---|---|---|---|---|
Disease | GEO accession | Genes in SuM | network | Observed | Expected | Observed | Expected |
Asthma | GSE4302 | 587 | 8 | 1 | 0.39 | 0 | 0.04 |
Breast cancer | GSE10810 | 2,474 | 7 | 2 | 1.45 | 1 | 0.15 |
Chronic lymphocytic leukemia | GSE8835 | 1,787 | 11 | 3 | 1.64 | 0 | 0.17 |
Colorectal cancer | GSE9348 | 1,651 | 5 | 3 | 0.69 | 1 | 0.07 |
Crohn's disease | GSE6731 | 1,458 | 16 | 5 | 1.95 | 3 | 0.20 |
Lung adenocarcinoma | GSE7670 | 2,524 | 10 | 4 | 2.11 | 0 | 0.21 |
Obesity | GSE12050 | 2,268 | 13 | 4 | 2.47 | 0 | 0.25 |
Parkinson's disease | GSE20141 | 1,871 | 21 | 5 | 3.29 | 1 | 0.33 |
Prostate cancer | GSE6919 | 751 | 16 | 3 | 1.01 | 1 | 0.10 |
Psoriasis | GSE13355 | 2,274 | 12 | 8 | 2.28 | 1 | 0.23 |
Schizophrenia | GSE17612 | 1,586 | 18 | 4 | 2.39 | 0 | 0.24 |
Type 2 diabetes | GSE20966 | 1,658 | 21 | 5 | 2.91 | 2 | 0.29 |
Ulcerative colitis | GSE6731 | 2,365 | 25 | 13 | 4.95 | 3 | 0.50 |
Total | - | - | - | 60 | 27.53 | 13 | 2.76 |