Table 4 Perl and PHP modules used in TFe
Language | Module | Purpose |
|---|---|---|
Perl | CGI | Web browser interface |
Perl | CGI::Session | User login |
Perl | Crypt::Blowfish | Data encryption and random string generation |
Perl | DBI | MySQL database interface |
Perl | GD::Image | Creation of TF binding site diagrams |
Perl | HTML::Detoxifier | User input filtering |
Perl | Image::Resize | Image resizing and formatting |
Perl | LWP::Simple | Interface between TFe and web-based APIs |
Perl | pazar | Data retrieval from PAZAR |
Perl | pazar::gene | Data retrieval from PAZAR |
Perl | pazar::reg_seq | Data retrieval from PAZAR |
Perl | TFBS::PatternGen::MEME | Creation of TF position weight matrices |
PHP | dompdf 0.5.1 | PDF generation |