Table 1 Comparison of assemblies produced by MetaVelvet and Ray Meta
From: Ray Meta: scalable de novo metagenome assembly and profiling
MetaVelvet | Ray Meta | Shared | |
|---|---|---|---|
ERS006494 | |||
Reads | 372,147,956 | ||
Scaffoldsa | 50,136 | 56,363 | |
Total length (nt) | 150,904,880 | 156,075,852 | 130,979,321 |
Average length (nt) | 3,009 | 2,769 | |
N50 length (nt) | 6,141 | 12,117 | |
Longest length (nt) | 146,549 | 570,359 | |
ERS006497 | |||
Reads | 322,444,920 | ||
Scaffoldsa | 61,093 | 52,194 | |
Total length (nt) | 113,403,805 | 111,187,163 | 94,649,612 |
Average length (nt) | 1,856 | 2,130 | |
N50 length (nt) | 2,778 | 5,430 | |
Longest length (nt) | 115,684 | 430,963 | |
Running time (h:min) | 4:34 | 10:06 | |
ERS006592 | |||
Reads | 53,869,960 | ||
Scaffoldsa | 4,358 | 9,387 | |
Total length (nt) | 19,501,348 | 24,687,275 | 18,061,386 |
Average length (nt) | 4,474 | 2,629 | |
N50 length (nt) | 8,819 | 10,277 | |
Longest length (nt) | 87,983 | 137,473 | |
Running time (h:min) | 0:41 | 4:28 | |
SRS011098 | |||
Reads | 202,487,723 | ||
Scaffoldsa | 30,458 | 36,130 | |
Total length (nt) | 60,574,679 | 83,736,387 | 51,938,031 |
Average length (nt) | 1,988 | 2,317 | |
N50 length (nt) | 3,117 | 4,961 | |
Longest length (nt) | 192,898 | 222,213 | |
Running time (h:min) | 8:34 | 6:38 | |
SRS017227 | |||
Reads | 139,002,751 | ||
Scaffoldsa | 106,957 | 89,953 | |
Total length (nt) | 171,200,737 | 186,958,660 | 126,068,148 |
Average length (nt) | 1,600 | 2,078 | |
N50 length (nt) | 2,168 | 3,771 | |
Longest length (nt) | 102,749 | 224,709 | |
Running time (h:min) | 9:00 | 7:10 | |
SRS018661 | |||
Reads | 288,475,194 | ||
Scaffoldsa | 30,709 | 18,541 | |
Total length (nt) | 35,281,226 | 36,891,130 | 21,659,465 |
Average length (nt) | 1,148 | 1,989 | |
N50 length (nt) | 1,223 | 3,794 | |
Longest length (nt) | 111,404 | 377,149 | |
Running time (h:min) | 1:24 | 4:42 | |