Table 1 Ler-specific H3K27me3 targets adjacent to TEs polymorphic between Col and Ler
Left_TE | Ler-specifc H3K27me3 | Group | Right_TE | TE family | PCR size in Col | PCR size in Ler | Confirmed target site duplication |
|---|---|---|---|---|---|---|---|
AT2G16820 | AT2G16830 | Rep_Col | AT2G16832 | Mutator-like | NA | NA | NA |
AT2TE65230 | AT2G34840 | Exp_Col | NO | DNA/MuDr | 2.8 kb | 1.8 kb | ATTTG |
NO | AT4G09143 | Rep_Col | AT4G09146 | LTR/Copia | NA | NA | NA |
Node | AT5G35810 | Rep_Col | AT5G35820 | LTR/Copia | 6.6 kb | 1.0 kb | ATACCT |
NO | AT5G42640 | Rep_Col | AT5G42645 | LTR/Copia | 7.9 kb | 3.0 kb | CCGCA |
NO | AT4G20480 | Exp_Col | AT4G20490 | LTR/GYPSY | NA | NA | NA |
AT4G10865 | AT4G10870 | Rep_Col | NO | AT4G10880 is not a TE | NA | NA | NA |
AT2G01550 | AT2G01560 | Rep_Col | NO | Non-LTR retrotransposon (LINE) | NA | NA | NA |
NO | AT3G60560 | Rep_Col | AT3G60565 | LTR/Copia | NA | NA | NA |
AT5TE82820 | AT5G56920 | Rep_Col | AT5TE82825 | left:DNA/AtREP10D; right:RC/Helitron | 3.3 kb | 2.0 kb | ATTAAGTAA |
NO | AT5G56910 | Exp_Col | AT5TE82820 | DNA/RP1-AT | 2.1 kb | 1.8 kb | no |
AT2TE37940 | AT2G20910 | Rep_Col | NO | DNA/MuDR | NA | NA | NA |
NO | AT1G66300 | Rep_Col | AT1TE81190 | RC/Helitron | NA | NA | NA |