Table 3 FOCAL designed experiments for reactions in galacturonate and glucuronate catabolism
From: FOCAL: an experimental design tool for systematizing metabolic discoveries and model development
Chosen reactiona | Enzyme | Associated gene | FOCAL selected carbon source |
|---|---|---|---|
galur | D-Galacturonate isomerase | uxaC | D-Galacturonate |
h + nadh + tagur | Altronate oxidoreductase | uxaB | D-Galacturonate |
altrn → 2ddglcn + h2o | Altronate hydrolase | uxaA | D-Galacturonate |
glcur | D-Glucuronate isomerase | uxaC | D-Glucuronate |
fruur + h + nadh | D-Mannonate oxidoreductase | uxuB | D-Glucuronate |
mana → 2ddglcn + h2o | D-Mannonate hydrolyase | uxuA | D-Glucuronate |
tagur