Table 1 Somatic variations in two GC tumors identified by whole genome sequencing approaches
From: Whole-genome reconstruction and mutational signatures in gastric cancer
Patient ID | NGCII082 | NGCII092 |
|---|---|---|
SNVs, all somatic | 14,856 | 17,473 |
Coding regions | 119 | 116 |
Non-synonymous | 86 | 73 |
Promoter regions | 101 | 161 |
Indels, all somatic | 11,738 | 2,486 |
Coding regions | 12 | 2 |
CNVs, all somatic | 836 | 21,776 |
Affecting genes | 3 | 265 |
SVs, all somatic | 12 | 146 |
Affecting genes | 11 | 96 |
Deletions | 6 | 56 |
Tandem duplications | 2 | 8 |
Unpaired inversions | 0 | 26 |
Inversions | 0 | 2 |
Insertions (intra-chromosomal) | 0 | 0 |
Insertions (inter-chromosomal) | 0 | 0 |
Isolated translocations | 0 | 3 |
Balanced translocations | 0 | 0 |
Complex events (intra- chromosomal) | 4 | 49 |
Complex events (inter- chromosomal) | 0 | 2 |