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Figure 4 | Genome Biology

Figure 4

From: InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor

Figure 4

Visualizing microarray and RNA-Seq gene expression data with IGV. Joint visualization in IGV of three datasets: two microarray (GSE20711 and ISDB6354) and one RNA-Seq (GSE27003). The three datasets share the ER pathway activation status annotation (ER+/ER-). The top part of the central panel displays gene expression heatmaps. The bottom view displays the splice variants for the RNA-Seq dataset. The view is zoomed in on the locus containing an example gene, GREB1, in chromosome 2 that is regulated in the two microarray datasets.

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