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Table 1 EpiExplorer's response time and memory footprint across thousands of actual user analyses

From: EpiExplorer: live exploration and global analysis of large epigenomic datasets

  Putative enhancers CpG islands (specific) Transcription start sites Gene promoters (-5kb to 1kb) 5hmC hotspots (Szulwach [35]) Genome-wide tiling regions (5kb)
Number of genomic regions 1,762 27,638 36,655 36,655 82,221 616,093
Preprocessing time (h) 0.2 0.8 0.9 0.9 1.5 17
Search index size (MB) 11 145 122 127 240 962
Mean query time (s) 0.02 0.06 0.12 0.13 0.2 0.8
95th percentile query time (s) 0.07 0.34 0.5 0.57 0.64 3.2
Percent queries completed in ≤2 s 100% 99.9% 99.7% 99.1% 99.1% 88%