Table 2 Lack of spreading of DNA methylation from ERV copies into gene transcription start sites
From: Epigenetic interplay between mouse endogenous retroviruses and host genes
ERV ID | Family | Type | Gene | Distance to TSS (bp) | % ERV methylation | % Gene promoter methylation | CGI promoter? | Tissue studied |
|---|---|---|---|---|---|---|---|---|
1027 | ETn/MusD | Solo | Eef1e1 | 1266 | MeDIP (see Table S1) | 1.4 | Yes | Spleen |
2374 | IAP | Full length | Gng10 | 2119 | 92 | 1 | Yes | Spleen |
3893 | ETn/MusD | Full length | Mthfd2l | 754 | 80* | 0* | Yes | ES cells, embryo, brain |
ti1080339794 | IAP | Full length | Gdpd3 | 437 | 75.7 | 0 | No | ES cells |
4305 | IAP | Solo | Hus1 | 1515 | 86 | 1 | Yes | ES cells |
8545 | IAP | Full length | Pnpt1 | 973 | 95a | 1* | Yes | ES cells, thymus |
9963 | IAP | Full length | Atxn1l | 1316 | 97 | 0 | Yes | Brain, liver |
ti1072970530 | IAP | Solo | B3galtl | 368 | 84.1 | 1.4 | Yes | Brain |
ti1102177987 | IAP | Full length | Eps15 | 1613 | 97.2 | 1 | Yes | Brain |