Table 1 5' LTR distribution and methylation analyses near CpG Island associated genes
From: Epigenetic interplay between mouse endogenous retroviruses and host genes
DNA methylation analysis | LTR closest to TSS (only full-length copies) | % methylated copies | % methylated copies near CGI promoters |
|---|---|---|---|
ETn/MusD | 5' LTR (n = 2) | 100 | 100 |
| Â | 3' LTR (n =3) | 33.3 | 0 |
IAP | 5' LTR (n = 7) | 100 | 85.7 |
| Â | 3' LTR (n = 12) | 91.6 | 54.5 |
Genome-wide analysis | LTR closest to TSS | % LTR associated with CGI promoters | P -value of equality of proportion test |
IAP (n = 56) | 5' LTR (n = 25) | 80 | 0.03143 |
| Â | 3' LTR (n = 31) | 48 | Â |