Table 1 Sample text file that can be read by methylKit.
From: methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
chrBase | chr | base | strand | coverage | freqC | freqT |
|---|---|---|---|---|---|---|
chr21.9764539 | chr21 | 9764539 | R | 12 | 25 | 75 |
chr21.9764513 | chr21 | 9764513 | R | 12 | 0 | 100 |
chr21.9820622 | chr21 | 9820622 | F | 13 | 0 | 100 |
chr21.9837545 | chr21 | 9837545 | F | 11 | 0 | 100 |
chr21.9849022 | chr21 | 9849022 | F | 124 | 72.58 | 27.42 |
chr21.9853326 | chr21 | 9853326 | F | 17 | 70.59 | 29.41 |