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Table 2 Main average indices for different sequencing strategies for 100 genomes (100-bp read length)

From: A cost-effective and universal strategy for complete prokaryotic genome sequencing proposed by computer simulation

ST

GCE (%)

SBE (%)

IDR (%)

FLT (%)

FDT (%)

CN

NB

SN

6xSE+10xPE

98.06775

0.00498

0.000339

0.4892094

0.190552

72.11

209661.1

4

10xSE+10xPE

98.09051

0.003982

0.000324

0.4596817

0.180621

63.08

240424.9

3.8367

15xSE+10xPE

98.308065

0.004018

0.000322

0.4731213

0.1733068

61.77

241163.8

3.9184

20xSE+10xPE

98.10211

0.004231

0.000339

0.4754001

0.1754001

59.65

244658.8

3.7642

  1. ST: Sequencing Strategy; GCE: Genome Coverage Rage; SBE: Single Base Error Rate; IDR: Indel Error Rate; FLT: False Gene Duplication Rate; FDT: False Gene Loss Rate; CN: Contig Number; NB: Contig N50 Size (bp); SN: Scaffold Number.
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Genome Biology

ISSN: 1474-760X

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