Table 1 Number of genes containing insertion of TEs from different families
From: A computational approach to identify transposable element insertions in cancer cells
Class/Family | HCC1954BL (N) | HCC1954 (T) |
|---|---|---|
DNA | 4 | 3 |
DNA/MuDR | 5 | 1 |
DNA/PiggyBac | 2 | 2 |
DNA/TcMar-Mariner | 10 | 9 |
DNA/TcMar-Tc2 | 6 | 8 |
DNA/TcMar-Tigger | 90 | 96 |
DNA/hAT | 2 | 8 |
DNA/hAT-Blackjack | 7 | 19 |
DNA/hAT-Charlie | 107 | 137 |
DNA/hAT-Tip100 | 12 | 19 |
LINE/CR1 | 23 | 25 |
LINE/Dong-R4 | 1 | 1 |
LINE/L1 | 863 | 641 |
LINE/L2 | 163 | 175 |
LINE/RTE | 9 | 13 |
LINE/RTE-BovB | 1 | 0 |
LTR | 1 | 2 |
LTR/ERV1 | 134 | 145 |
LTR/ERVK | 11 | 17 |
LTR/ERVL | 70 | 77 |
LTR/ERVL-MaLR | 148 | 186 |
LTR/Gypsy | 6 | 7 |
Other | 5 | 4 |
RNA | 1 | 3 |
SINE | 6 | 17 |
SINE/Alu | 264 | 406 |
SINE/Deu | 5 | 14 |
SINE/MIR | 109 | 145 |
SINE/tRNA | 0 | 3 |
Satellite | 7 | 15 |
Satellite/acro | 2 | 1 |
Satellite/centr | 52 | 112 |
Unknown | 6 | 8 |
rRNA | 14 | 11 |
scRNA | 4 | 2 |
snRNA | 0 | 2 |
srpRNA | 4 | 1 |
tRNA | 0 | 1 |
Total | 2.154 | 2.340 |