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Table 4 Power for identifying disease-causing rare mutations

From: Comprehensive comparison of three commercial human whole-exome capture platforms

  NA-r1 NA-r2 NS-r1 NS-r2 AS-r1 AS-r2
High quality genotype assigned sites 32,139 32,674 31,750 31,923 31,685 31,353
Reference genotypes 32,124 32,658 31,732 31,909 31,666 31,335
SNPs 15 16 18 14 19 18
Low quality genotype assigned sites 6,064 5,529 6,453 6,280 7,349 7,681
Uncovered 1,703 1,703 1,703 1,703 872 872
  1. For each replicate, the 30-fold data set used for Tables 2 and 3 analyses was also used for this analysis. AS, Agilent solution; NA, NimbleGen array; NS, NimbleGen solution; r1 and r2 are two replicate experiments for each platform.