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Table 1 Capture specificity of the three human exome capture platforms

From: Comprehensive comparison of three commercial human whole-exome capture platforms

  Filtered Mapped to genome Uniquely mapped to genome Uniquely mapped to TR Uniquely mapped to TFR
Replicatea Reads (M) Read length Bases (Mb) Percent of reads Bases (Mb) Percent of reads Bases (Mb) Percent of reads Bases (Mb) Percent of reads Bases (MB)
NA_r1 37 PE90 3,352 85.2 2,793 81.4 2,682 53.5 1,437 63.1 2,064
NA_r2 58 PE90 5,210 79.3 4,115 76.0 3,944 56.4 2,370 67.9 3,481
NS_r1 31 PE90 2,781 86.4 2,402 82.3 2,287 54.2 1,192 67.7 1,860
NS_r2 80 PE90 7,230 85.9 6,163 82.8 5,964 55.0 3,175 67.6 4,787
AS_r1 26 PE90 2,220 84.4 1,868 74.4 1,645 58.1 1,146 60.1 1,332
AS_r2 66 PE90 5,720 78.8 4,496 69.2 3,950 54.6 2,776 56.4 3,225
  1. aAS, Agilent solution; NA, NimbleGen array; NS, NimbleGen solution; r1 and r2 are two replicate experiments for each platform. TFR, targeted and flanking regions; TR, targeted regions.