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Figure 4 | Genome Biology

Figure 4

From: Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis

Figure 4

Distribution of quality score from SAMtools Pileup. Filtering was conducted at the 95th percentile of the consensus and SNP quality distributions reported by SAMtools; only the distribution of SNP quality values is depicted here. The blue bar is the 95th percentile score cutoff, discounting variants with max score. (a) SNP quality scores derived from Illumina base calls. (b) SNP quality scores derived from Srfim base calls.

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