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Table 2 Nucleotide variation in self-self assemblies

From: Expanding whole exome resequencing into non-human primates

 

Human

Chimpanzee

Rhesus macaque

 

Hom

Het

Hemi

Hom

Het

Hemi

Hom

Het

Hemi

Deletions

         

   Frameshift

10

53

0

114

119

15

169

162

4

   Amino acid loss

13

63

0

7

68

3

16

73

0

Insertions

         

   Frameshift

13

52

4

85

83

22

128

169

6

   Amino acid gain

12

42

1

5

57

1

9

62

1

MNP

         

   Synonymous

23

34

2

22

57

5

20

77

1

   Non-synonymous

79

269

2

312

571

47

245

793

9

   Stop codon gain

0

7

0

1

19

2

0

25

1

   Stop codon loss

1

0

0

0

2

0

0

1

0

SNP

         

   Synonymous

4,259

8,159

206

3,204

11,549

198

8,777

14,878

233

   Non-synonymous

3,618

8,336

155

3,725

12,465

346

6,158

13,252

220

   Stop codon gain

8

171

2

11

286

2

34

339

3

   Stop codon loss

9

7

0

2

21

0

18

20

1

Genes

         

   Deletion frameshift

10

 

0

107

 

14

159

 

4

   Insertion frameshift

13

 

4

85

 

21

125

 

6

   Either

23

 

4

182

 

35

280

 

9

   Stop codon gain

8

 

2

12

 

4

34

 

4

   Stop codon loss

10

 

0

2

 

0

17

 

1

   Either

18

 

2

14

 

4

51

 

5

   Any of above

41

 

6

194

 

38

327

 

14

  1. Nucleotide level variation observed in self-self assemblies. Hemi, hemizygous; Het, heterozygous; Hom, homozygous; MNP, multi-nucleotide polymorphism; SNP, single-nucleotide polymorphism.
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Genome Biology

ISSN: 1474-760X

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