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Table 2 SNP variant calls in the seven Exon Pilot populations

From: The functional spectrum of low-frequency coding variation

 

LWK

YRI

CHB

CHD

JPT

CEU

TSI

All 697

Unique to BC

        

   SNPs

580

716

925

831

983

613

448

1,384

   %dbSNP

23.5

15.6

26.7

24.1

27.6

19.9

23.4

5.4

   Ts/Tv

2.09

0.95

1.23

1.68

1.54

0.92

0.71

1.38

Both BC and BI

        

   SNPs

5,459

5,175

3,415

3,431

2,900

3,489

3,281

12,758

   %dbSNP

50.1

53.8

52.6

50.3

57.9

65.9

65.6

30.36

   Ts/Tv

3.67

3.56

3.74

3.64

3.67

3.47

3.53

3.82

Unique to BI

        

   SNPs

911

694

557

450

1,819

327

1,004

5,391

   %dbSNP

9.8

10.2

5.8

6.4

1.7

15.9

4.8

3.13

   Ts/Tv

1.56

1.48

1.37

1.33

0.74

1.32

0.85

1.05

  1. Calls made by the Boston College pipeline only (unique to BC), calls made by the Broad Institute pipeline only (unique to BI), and calls made by both pipelines (both BC and BI) are reported. Ts/Tv, transition/transversion ratio.
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Genome Biology

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