From: The functional spectrum of low-frequency coding variation
Population | YRI | LWK | CHB | CHD | JPT | CEU | TSI | All |
---|---|---|---|---|---|---|---|---|
Samples | 112 | 108 | 109 | 107 | 105 | 90 | 66 | 697 |
Technologies | ILL,454 | 454 | ILL,454 | ILL,454 | ILL,454 | ILL,454 | ILL | ILL,454 |
SNPs | 5,175 | 5,459 | 3,415 | 3,431 | 2,900 | 3,489 | 3,281 | 12,758 |
%dbSNP | 53.8 | 50.1 | 52.6 | 50.3 | 57.9 | 65.9 | 65.6 | 30.36 |
Ts/Tv | 3.56 | 3.67 | 3.74 | 3.64 | 3.67 | 3.47 | 3.53 | 3.82 |
Read coverage (first quartile) | 18× | 19× | 18× | 30× | 20× | 20× | 20× | 19× |
Read coverage (median) | 27× | 25× | 22× | 36× | 26× | 43× | 57× | 29× |
Read coverage (mean) | 52× | 25× | 40× | 49× | 43× | 69× | 71× | 48× |
Read coverage (third quartile) | 42× | 32× | 37× | 44× | 54× | 98× | 118× | 49× |
Heterozygosity, all sites | 4.42 | 4.52 | 3.34 | 3.35 | 3.26 | 3.54 | 3.5 | - |
Heterozygosity, four-fold synonymous sites | 9.24 | 9.16 | 6.6 | 6.63 | 6.43 | 7.12 | 7.04 | - |
Heterozygosity, three-fold synonymous sites | 5.01 | 5.41 | 4.24 | 4.39 | 4.6 | 3.59 | 3.59 | - |
Heterozygosity, two-fold synonymous sites | 6.04 | 6.16 | 4.447 | 4.42 | 4.37 | 4.74 | 4.68 | - |
Heterozygosity, non-synonymous sites | 2.74 | 2.86 | 2.19 | 2.21 | 2.12 | 2.31 | 2.29 | - |